[Bug]: Has medaka models updated to support v14 chemistry

epi2me-labs / wf-artic

ARTIC SARS-CoV-2 workflow and reporting

https://labs.epi2me.io/

Other

49 stars 36 forks source link

[Bug]: Has medaka models updated to support v14 chemistry #75

Closed llk578496 closed 1 year ago

llk578496 commented 1 year ago

What happened?

As we are planning to switch to the v14 chemistry, may I know if the medaka in the wf-artic updated to support the model r1041_e82_400bps_sup_g615?

Operating System

ubuntu 20.04

Workflow Execution

Command line

Workflow Execution - EPI2ME Labs Versions

No response

Workflow Execution - CLI Execution Profile

Docker

Workflow Version

0.3.21

Relevant log output

rrdavis77 commented 1 year ago

We have the exact same question about getting a possible update to support the latest version of medaka and latest flowcell support

mattdmem commented 1 year ago

Apologies for the delay - coming in v0.3.23!

mattdmem commented 1 year ago

@rrdavis77 - v0.3.23 with updated medaka models is out now! please use --medaka_model r1041_e82_400bps_sup_g615 when executing from the command, or if using EPI2ME Labs then you can select the correct model in the dropdown under "Advanced"