epi2me-labs / wf-bacterial-genomes

Small variant calling for haploid samples
https://labs.epi2me.io/
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Collapse contig coverage graphs #35

Open adbeggs opened 1 month ago

adbeggs commented 1 month ago

Is your feature related to a problem?

No problem, but if you are doing shotgun metagenomics for e.g. human stool samples, there are a lot of contigs!!

Describe the solution you'd like

The ability to collapse them or have the output on a separate page or chooseable like the Pavian sample level output would be very useful

Describe alternatives you've considered

Doing my own pipeline

Additional context

No response

cjalder commented 1 month ago

Thanks for the suggestion @adbeggs. We're planning an overhaul of the summary report soon, so will definitely take this into account!