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epi2me-labs / wf-bacterial-genomes

Small variant calling for haploid samples
https://labs.epi2me.io/
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From basecalling to error correction (Fastq to Fasta) as input to wf-bacterial genome #42

Open jibrantahir opened 3 months ago

jibrantahir commented 3 months ago

Ask away!

Hi I want to ask that downstream from base calling we do error-correction using dorrado , the step which convert fastq to fasta. However in wf-bacterial workflow we directly use fastq. Which fastq is it - uncorrected. And can we use fasta as input. Many thanks