pulling update error

[BastianBrauer]

Operating System

Other Linux (please specify below)

Other Linux

20

Workflow Version

1.0.1

Workflow Execution

EPI2ME Desktop application

EPI2ME Version

5.1.3

CLI command run

No response

Workflow Execution - CLI Execution Profile

standard (default)

What happened?

basecalling workflow doesnt update

Relevant log output

{
  "name": "Update workflow",
  "description": "Pull the latest revisions for this workflow",
  "updates": [
    {
      "message": "Checking workflow"
    },
    {
      "message": "Checking Nextflow initialises"
    },
    {
      "message": "Nextflow is ready to use."
    },
    {
      "message": "Java is ready to use."
    },
    {
      "message": "Docker is online and ready to use."
    },
    {
      "message": "All Setup tests are passing"
    },
    {
      "message": "Checking epi2me-labs/wf-basecalling"
    },
    {
      "message": "Update available"
    },
    {
      "message": "Downloading update"
    },
    {
      "message": "Error running nextflow pull"
    }
  ],
  "id": "01HE396DHKPKG6XA36TD7BYBX8",
  "percentage": 57,
  "status": "STOPPED_WITH_ERROR",
  "createdAt": "2023-10-31T16:31:16.531Z",
  "updatedAt": "2023-10-31T16:31:21.987Z",
  "metadata": {
    "trace": {
      "nxfCmd": "/usr/lib/epi2me/resources/nextflow-all",
      "nxfArgs": [
        "-h"
      ],
      "nxfExitCode": "0",
      "javaCmd": "java",
      "javaArgs": [
        "-h"
      ],
      "javaVersion": "openjdk 11.0.20.1 2023-08-24\nOpenJDK Runtime Environment (build 11.0.20.1+1-post-Ubuntu-0ubuntu120.04)\nOpenJDK 64-Bit Server VM (build 11.0.20.1+1-post-Ubuntu-0ubuntu120.04, mixed mode, sharing)\n",
      "javaExitCode": "0",
      "dockerCmd": "docker",
      "dockerArgs": [
        "images"
      ],
      "dockerVersion": "Docker version 24.0.6, build ed223bc\n",
      "dockerExitCode": "0",
      "pullExitCode": 1,
      "pullStdout": "Checking epi2me-labs/wf-basecalling ...\n",
      "pullStderr": "Cannot find revision `v1.1.1` -- Make sure that it exists in the remote repository `https://github.com/epi2me-labs/wf-basecalling`\n",
      "trace": "Non-zero exit status"
    },
    "track": {
      "workflowName": "epi2me-labs/wf-basecalling",
      "latestTag": "v1.1.1"
    }
  }
}

Application activity log entry

No response

[Nas654]

Hi Bastian, how did you resolve this?