I am using Epi2Me on an M2 Macbook pro with the latest OS (14.2.1 (23C71)) and cannot get past this error message that terminates wf-basecalling v1.1.2.
"The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested"
I have read elsewhere that this error message a problem with Docker but I can't see why this should not be fixable from within the Epi2Me options in setting up the wf-basecalling workflow.
Does anyone have any ideas how to get around this other than tinkering with Docker?
Relevant log output
This is epi2me-labs/wf-basecalling v1.1.2.
--------------------------------------------------------------------------------
[45/279ecf] Submitted process > getVersions
[3b/b01263] Submitted process > getParams
[ba/43a889] Submitted process > wf_dorado:make_mmi
[be/5193f8] Submitted process > cram_cache
[5e/a67b96] Submitted process > wf_dorado:dorado (2)
[a9/d98898] Submitted process > wf_dorado:dorado (1)
ERROR ~ Error executing process > 'wf_dorado:dorado (2)'
Caused by:
Process `wf_dorado:dorado (2)` terminated with an error exit status (125)
Command executed:
set +e
source /opt/nvidia/entrypoint.d/*-gpu-driver-check.sh # runtime driver check msg
set -e
# CW-2569: convert the pod5s contextually
if [[ "false" == "true" && "pod5" == "fast5" ]]; then
pod5 convert fast5 ./*.fast5 --output . --threads 8 --one-to-one ./
fi
# Run dorado on the new pod5s
dorado basecaller ${DRD_MODELS_PATH}/dna_r10.4.1_e8.2_400bps_hac@v4.3.0 . --modified-bases-models ${DRD_MODELS_PATH}/dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 --device cuda:all | samtools view --no-PG -b -o 1.ubam -
# CW-2569: delete the pod5s, if emit not required.
if [[ "false" == "true" && "pod5" == "fast5" ]]; then
rm -r converted/
fi
Command exit status:
125
Command output:
(empty)
Command error:
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
docker: Error response from daemon: could not select device driver "" with capabilities: [[gpu]].
time="2024-01-05T20:50:43+11:00" level=error msg="error waiting for container: "
Work dir:
/Users/mikeds/epi2melabs/instances/wf-basecalling_01HKCGG6DM9CGD530CKFYQG30J/work/5e/a67b967b01b7fbe046e3f836c01531
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
-- Check '/Users/mikeds/epi2melabs/instances/wf-basecalling_01HKCGG6DM9CGD530CKFYQG30J/nextflow.log' file for details
WARN: Killing running tasks (2)
Operating System
macOS
Other Linux
No response
Workflow Version
wf-basecalling v1.1.2.
Workflow Execution
EPI2ME Desktop application
EPI2ME Version
v5.1.8
CLI command run
No response
Workflow Execution - CLI Execution Profile
None
What happened?
I am using Epi2Me on an M2 Macbook pro with the latest OS (14.2.1 (23C71)) and cannot get past this error message that terminates wf-basecalling v1.1.2. "The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested" I have read elsewhere that this error message a problem with Docker but I can't see why this should not be fixable from within the Epi2Me options in setting up the wf-basecalling workflow. Does anyone have any ideas how to get around this other than tinkering with Docker?
Relevant log output
Application activity log entry
No response