failed to run commands - Githubissues

ryao-mdanderson commented 3 months ago

Ask away!

Dear author,

For some reasons, I could failed to nextflow run epi2me-labs/wf-clone-validation –help

the error message is ERROR ~ Validation of pipeline parameters failed! -- Check '.nextflow.log' file for details ERROR ~ * Missing required parameter: --fastq -- Check '.nextflow.log' file for details

I also tried running with demo data, I hit an error : ERROR ~ Error executing process > 'pipeline:medakaVersion' Caused by: Failed to pull singularity image command: singularity pull --name ontresearch-medaka-sha61a9438d745a78030738352e084445a2db3daa2a.img.pulling.1710195000442 docker://ontresearch/medaka:sha61a9438d745a78030738352e084445a2db3daa2a > /dev/null status : 255 ... FATAL: While making image from oci registry: error fetching image to cache: while building SIF from layers: conveyor failed to get: no descriptor found for reference "3290aa3a218b2b5b4e77cfeb367d91827f32ea827cc90219e723b00a6fb6f490" issue report to github

Please advise if I overlooked anything.

Thank you, Rong Yao

cjw85 commented 3 months ago

Please reopen your issue using the appropriate issue template. Providing the requested information really helps us to help you.

ryao-mdanderson commented 3 months ago

nextflow.log Attached .nextflow.log

epi2me-labs / wf-clone-validation

failed to run commands #41

Ask away!