workflow in HPC cluster

epi2me-labs / wf-clone-validation

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workflow in HPC cluster #44

Closed mbacino closed 5 months ago

mbacino commented 7 months ago

Ask away!

I do not have super user privileges on my HPC cluster and therefore cannot run a rooted version of docker. Is there a way around this so that I can run this workflow on the HPC? Can this work flow supported by a rootless version of docker? Thanks!

sarahjeeeze commented 6 months ago

Hey, we don't currently have support for the rootless version. The other option which we do support is singularity which overcomes the privileges issue. https://labs.epi2me.io/singularity/

sarahjeeeze commented 5 months ago

Closing through lack of response