Open gudedsh opened 1 month ago
These containers are used by our workflows, they do not contain nextflow
because they do not need to.
Hi @gudedsh, wf-cnv is a deprecated workflow and you'll probably be wanting to look at wf-human-variation (https://github.com/epi2me-labs/wf-human-variation) instead.
Your problem report says you are using the EPI2ME Desktop application but I'm not sure that is the case from your log output. Can you provide some more information on what command you ran on the command line and what you expected to happen? It looks as though you might be trying to run Nextflow from inside one of our workflow containers, note that these containers are launched by running our Nextflow workflows (and so do not need to include Nextflow).
What happened?
I am trying to use the docker container ontresearch/wf-cn or ontresearch/wf-human-variation, but it did not work, the error as below: bash: nextflow: command not found
Operating System
ubuntu 20.04
Workflow Execution
EPI2ME Labs desktop application
Workflow Execution - EPI2ME Labs Versions
No response
Workflow Execution - CLI Execution Profile
None
Workflow Version
ontresearch/wf-human-variation
Relevant log output