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epi2me-labs / wf-human-variation

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Using singularity to test the demo data #140

Closed heksaani closed 4 months ago

heksaani commented 4 months ago

Ask away!

Hey I am trying to run the workflow in HPC which does not have docker, how could I use singularity to run the pipeline ?

SamStudio8 commented 4 months ago

@heksaani The workflow has a Singularity profile which can be activated with -profile singularity. You may need to speak to your HPC administrator to find out if you need to set additional configuration options for Nextflow to work with Singularity on your HPC.

heksaani commented 4 months ago

Thank you !