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epi2me-labs / wf-human-variation

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Update wf-human-variation in an environment without internet access #147

Closed ParkShinHyun closed 4 months ago

ParkShinHyun commented 4 months ago

Ask away!

I installed wf-human-variation for the first time last year and have been using version v1.9.0. To use it in an environment without internet access, I initially initialized wf-human-variation and then copied the singularity image to an environment without internet access. If I want to use the latest version, v1.11.0, should I move the existing v1.9.0 image file elsewhere and then initialize wf-human-variation? Also, if I need to use version v1.9.0 again depending on the situation, is there a way to do that?

SamStudio8 commented 4 months ago

You can download the v1.11 images to the same directory as you have stored your v.1.9 images as they will have different file names. There are a few ways to support swapping the versions of the workflow depending on how you have installed the workflow. If you run the workflow from Github (eg. nextflow run epi2me-labs/wf-human-variation, you can use the -r option to set the version). Alternatively if you clone the repository to run the workflow, you can use git to change the currently checked out version.