Closed wdiao-zju closed 1 year ago
Hello @wdiao-zju - the wf-metagenomics workflow has been updated; are you still facing this issue?
The updated workflow now uses the kraken2 software for taxonomic assignment - there is a healthy collection of indices that can be used available at e.g. https://benlangmead.github.io/aws-indexes/k2
Please let us know if you are still facing problems with running your sequence analysis.
Hi, Thank you for using the workflow. Could you confirm if this issue has been solved? We'll close this ticket on the assumption things are now resolved.
This workflow can work for sample.fastq.gz using zymo database, however, Not work in hpvc database. I wanna know which cause this error. Thanks!
It can work as follows:
It can NOT work as follows:
Error info
My enviroment infomation