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epi2me-labs / wf-metagenomics

Metagenomic classification of long-read sequencing data
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Proxy setting #90

Closed anditg closed 6 months ago

anditg commented 7 months ago

Ask away!

HI wf-metagenomics Team Thanks for the great project. I've been using it for a while now to analyse all kinds of sequencing projects. Recently got a new Linux machine and cannot get it to work on that. Behind a firewall. Together with our IT guy we set certificates and proxies in a way that nextflow, java and docker all work. However, when I try to call wf- metagenomics it always gets stuck at "unpacking kraken2 indexes". I believe it can somehow not download the databases correctly. The website is not blocked, I can access it with wget for example. Would you have an idea on how to get this to work? Thanks in advance

nggvs commented 7 months ago

Hi @anditg , Thank you for using the workflow! Could you send us the logs of the error you are getting? Thank you very much!

nggvs commented 6 months ago

Hi @anditg , Have you been able to run the workflow? Thank you very much!

anditg commented 6 months ago

Dear Natalia

Thanks for reaching out. The problem still persists but i believe its a firewall/proxy/certificate problem of our institution, passing them properly to docker. I dont want to bother you until we do our homework. Once thats resolved I will gladly ask for help again if there should be any problems.

Thanks again and best wishes

Andi

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Am Freitag, 24. Mai 2024 um 13:48, Natalia Garcia Garcia @.***(mailto:Am Freitag, 24. Mai 2024 um 13:48, Natalia Garcia Garcia < schrieb:

Hi @.***(https://github.com/anditg) , Have you been able to run the workflow? Thank you very much!

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nggvs commented 6 months ago

Thank you very much! Hope you manage to get it sorted! Warmly welcome to open new issues!