mpox clade typing

[lukebsnell]

Is your feature related to a problem?

would be useful if the wf typed to clade, given the mpox PHEIC for clade 1b.

Describe the solution you'd like

^

Describe alternatives you've considered

^

Additional context

https://www.who.int/news/item/14-08-2024-who-director-general-declares-mpox-outbreak-a-public-health-emergency-of-international-concern

[bede]

Hi Luke, The newly released v1.1.1 workflow types the reference-based consensus assembly using Nextclade, and will also attempt to type the de novo assembly if that option is enabled.

Thanks, Bede