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why .hic file in juice box have lots of black line #40

Closed markme123 closed 10 months ago

markme123 commented 11 months ago

Ask away!

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sarahjeeeze commented 11 months ago

Hi, thanks for the feedback. What reference are you using? And are you using the juicebox web app? https://aidenlab.org/juicebox/. I do not get these black lines with a human data set using GRCh38 reference genome

markme123 commented 11 months ago

I broke the gh38 genome into 10M contig, Simulated mounting using poreC data. I use juicebox desktop, can't move this contig。 I was run other Porec data, but have same question.

sarahjeeeze commented 11 months ago

Hi, it sounds more like a question for the juicebox team.

sarahjeeeze commented 10 months ago

Closing as not relevant to the pore-c workflow but the juicer tool