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epi2me-labs / wf-single-cell

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the new reference release by 10x #118

Closed wanghlv closed 2 months ago

wanghlv commented 3 months ago

Ask away!

Hi, I'm wondering have you tested the new reference release by 10x. "https://cf.10xgenomics.com/supp/cell-exp/refdata-gex-GRCh38-2024-A.tar.gz" Thanks! Hsiao-Lin

nrhorner commented 3 months ago

Hi @wanghlv

I wasn't aware there was a new release. Thanks for letting us know, I will try it out.

Thanks,

Neil

wanghlv commented 3 months ago

Thanks Neil! Also it's using the GRCh38.p14 not GRCh38.p13, but I think the genomic location/coordinate doesn't change. Human GRCh38 (GENCODE v44/Ensembl110 annotations). Here is the link to the release note: https://www.10xgenomics.com/support/software/cell-ranger/latest/release-notes/cr-reference-release-notes. Thanks again!