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epi2me-labs / wf-single-cell

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Requesting detailed information about each read #137

Closed sagnikbanerjee15 closed 1 month ago

sagnikbanerjee15 commented 2 months ago

Is your feature related to a problem?

I wish to understand the fate of each nanopore read that I submit for processing. At the current state, the workflow outputs information only for the reads that have been assigned to a gene/transcript. It would be beneficial to understand what happens to the other reads.

Describe the solution you'd like

A tab-delimited file (much like read_tags.tsv) with more information about all reads.

Describe alternatives you've considered

Without the unmapped reads, there is no alternative to explore

Additional context

No response

nrhorner commented 2 months ago

HI @sagnikbanerjee15

Thanks for you suggestion. We'll consider adding the functionality to the workflow

nrhorner commented 1 month ago

Closing for now, but will let you know when we get round to adding this functionality