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GFF isoform output for follow-up SQANTI3 analysis #69

Closed Qirongmao97 closed 8 months ago

Qirongmao97 commented 10 months ago

Ask away!

Hi, I was wondering where I could find the isoforms in GFF isoform output file from the wf-single-cell pipeline. Would be great if I could know and apply it for further SQANTI3 analysis. Thanks!

nrhorner commented 10 months ago

Hi @Qirongmao97

This seems to be a duplicate of this question? https://github.com/epi2me-labs/wf-single-cell/issues/64 I will look at the possibility of getting this added to the output directory in an upcoming release

nrhorner commented 8 months ago

@Qirongmao97 The isoforms GFF can now be found at //.transcriptome.gff.gz Closing this issue now, thanks