Isoform-level expression count matrix?

epi2me-labs / wf-single-cell

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Isoform-level expression count matrix? #92

Open sheetsvicky opened 6 months ago

sheetsvicky commented 6 months ago

Ask away!

Currently, gene_expression.counts.tsv and .expression.counts.tsv files are available in the output. I'm curious about how I can obtain the count matrix at the isoform level (chr.stringtie.xxxx). Are there any result files or additional tools that provide that information? Thank you!

eseffar commented 6 months ago

Same question here. That would be great to have a way to generate those files.

cjw85 commented 6 months ago

We don't currently have a timeline for adding this, though we will consider it for the next major release.