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epi2me-labs / wf-somatic-variation

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error exit code 1 #19

Closed selmapichot closed 2 months ago

selmapichot commented 2 months ago

Ask away!

Hi, I had this error message after running this workflow with unaligned tumour/normal bam files with the GRCh38 as reference genome: The exit status of the task that caused the workflow execution to fail was: 1.

The full error message was:

Error executing process > 'snv:concat_bams (1)'

Caused by: Process snv:concat_bams (1) terminated with an error exit status (1)

Any advice on how to sort this issue ? Many thanks. All the best, Selma.

RenzoTale88 commented 2 months ago

Hi @selmapichot please re-open this as a Bug Report. The page will ask you a number of pieces of information that are useful for us to be able to help you.