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epi2me-labs / wf-transcriptomes

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[Bug]: ERROR ~ expecting '}', found ',' @ line 229, column 44 #10

Closed gaobaoqing-picb closed 1 year ago

gaobaoqing-picb commented 1 year ago

What happened?

when I run the command "nextflow run epi2me-labs/wf-transcriptomes --help" in linux , the following error occurs： N E X T F L O W ~ version 0.30.1 Launching epi2me-labs/wf-transcriptomes [loving_goldstine] - revision: 14ee337036 [master] ERROR ~ expecting '}', found ',' @ line 229, column 44. ("${sample_id}_annotated.gtf"), emit: gt

Operating System

ubuntu 20.04

Workflow Execution

Command line

Workflow Execution - EPI2ME Labs Versions

version 0.30.1

Workflow Execution - Execution Profile

No response

Workflow Version

version 0.30.1

Relevant log output

N E X T F L O W  ~  version 0.30.1
Launching `epi2me-labs/wf-transcriptomes` [loving_goldstine] - revision: 14ee337036 [master]
ERROR ~ expecting '}', found ',' @ line 229, column 44.
   ("${sample_id}_annotated.gtf"), emit: gt
cjw85 commented 1 year ago

Hi @gaobaoqing-picb,

Your version of nextflow (v0.30.1) seems rather old. You will need to update before running any of our workflows.

sarahjeeeze commented 1 year ago

Closing through lack of response.