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epi2me-labs / wf-transcriptomes

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Results from pychopper or minimap2 not found #23

Closed dakomura closed 10 months ago

dakomura commented 12 months ago

What happened?

The output files processed by this pipeline do not include the results from pychopper or minimap2. Is there an option to include their outputs in the files? Or is there a way to know the specific commands of pychopper and minimap2 used in this pipeline, so I could process them using these tools by myself?

Operating System

Windows 10

Workflow Execution

EPI2ME Labs desktop application

Workflow Execution - EPI2ME Labs Versions

No response

Workflow Execution - CLI Execution Profile

None

Workflow Version

wf-transcriptomes v0.1.13-gcb73e0a

Relevant log output

none
sarahjeeeze commented 12 months ago

Thanks for the feedback, We will consider adding these in a future release.

sarahjeeeze commented 10 months ago

Thanks again for the feedback, we will consider this but won't be adding it in the near future so closing for now.

nrhorner commented 6 months ago

Hi @dakomura alignment BAM files and pychopper output are now included in v1.0.0

dakomura commented 6 months ago

Hi @nrhorner Thank you for the update!