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epi2me-labs / wf-transcriptomes

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wrong MA plot in report #44

Closed lukashellmann closed 2 months ago

lukashellmann commented 7 months ago

Operating System

Windows 10

Other Linux

debian 12

Workflow Version

0.4.1

Workflow Execution

EPI2ME Desktop application

EPI2ME Version

No response

CLI command run

No response

Workflow Execution - CLI Execution Profile

None

What happened?

Hi,

the MA plot in the report is different from the one in the de_analysis folder:

wf-transcriptomes-report.html bokeh_plot

de_analysis/results_dge.pdf grafik

The number of significant genes should be correct in the pdf file, according to the numbers in the table. The plot in the report.html does not seem to change at all for different data/analysis.

Best Lukas

Relevant log output

no error in log observed

Application activity log entry

No response

sarahjeeeze commented 7 months ago

Hi, thanks for pointing this out. We will investigate this difference and see if we need to amend the report plot.

sarahjeeeze commented 6 months ago

Hi, sorry we have not managed to look in to this yet - We hope to look at it soon.

lukashellmann commented 6 months ago

Hi, thanks for taking the time!

sarahjeeeze commented 6 months ago

Have identified the issue, we have a different significance level set for each of the plot. Will update in the next release

sarahjeeeze commented 4 months ago

Sorry for the delay, this will be updated soon.

sarahjeeeze commented 2 months ago

This is fixed in the prerelease