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How to install EPI2ME in the cluster? #58

Closed WQQIGDB closed 3 months ago

WQQIGDB commented 5 months ago

Ask away!

I'm a begaining learner on EPI2ME usage. I referred to the instructions https://labs.epi2me.io/installation/#installation-on-linux to try to install EPI2ME in the cluster. But I feel confused with the steps of installation. The wfquickstart https://labs.epi2me.io/wfquickstart/ shows that EPI2ME uses Nextflow and Docker. Does that mean I should install both of them before installing EPI2ME? Also it uses the sudo apt install command. Are there any other solutions to accomplish the installation such as via conda? Hopefully you can guide me on the installation.

cjw85 commented 5 months ago

If you are unfamiliar with installing software on a Linux computer, I would in the first instance talk to your system administrator.

To use workflows through the EPI2ME Desktop application does not require you to separately install Nextflow, but you should install Docker as described in the documentation.

WQQIGDB commented 5 months ago

If you are unfamiliar with installing software on a Linux computer, I would in the first instance talk to your system administrator.

To use workflows through the EPI2ME Desktop application does not require you to separately install Nextflow, but you should install Docker as described in the documentation.

Thank you for your reply. Here is the email of the system administrator: Hopefully you can contact with him and also copy to me via

cjw85 commented 5 months ago

I have removed the email address from your comment to save you from spam.

You should talk to your system admins yourself.

sarahjeeeze commented 3 months ago

Closing through lack of response