Options to add transcript ensembl id to the aln bam file

[Yijun-Tian]

Ask away!

Hi, Since the majority of the long reads confidently direct to certain reference isoform, is there a way to add the stable id of the isoform to BAM alignment as a tag? Or is there a data table with that information already? Thanks,

[Yijun-Tian]

I would like to reformat this question as: is there a way to retain the input FASTQ id as the gffcompare input fasta read id? That way I can mapping the alignment to certain isoform according to gffcompare output.

[Yijun-Tian]

closed as no responses