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epifluidlab / FinaleMe

MIT License
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How can I know the methylation status from each cfDNA fragment #11

Closed wangxincer closed 3 weeks ago

wangxincer commented 1 month ago

I have completed steps 1 to 4 and obtained a file named 'test.FinaleMe.mincg7.prediction.bed.gz'. This file contains the predicted methylation levels for each CpG site in the ref genome. How can I determine the methylation status of each CpG site within a specific fragment?

dnaase commented 3 weeks ago

Since the file size is very big, we only provide the aggregated prediction results at CpG position.