epiforecasts / EpiSoon

Forecasting the effective reproduction number over short timescales
https://epiforecasts.io/EpiSoon/
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Predict incidences #1

Closed seabbs closed 4 years ago

seabbs commented 4 years ago

Need to first implement pseudo-code and then actual code for how to predict incidences from a single sample of Rts (with dates in a dataframe).

See scaffold here: https://github.com/epiforecasts/EpiSoon/blob/master/R/predict_incidences.R

a wrapper for infectiousness should be used (https://github.com/epiforecasts/EpiSoon/blob/master/R/infectiousness.R)

Please include a working example.