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epiforecasts / covid-rt-estimates

National and subnational estimates of the time-varying reproduction number for Covid-19
https://epiforecasts.io/covid/
MIT License
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Missing data - Saudi Arabia #184

Open josebsalazar opened 3 years ago

josebsalazar commented 3 years ago

Saudi Arabia data hasn't updated since Jan-04-2021, even though time stamp indicates current data.

joeHickson commented 3 years ago

It's been timing out since the 21st - not sure how it could produce a partial set on the 21st (the latest files in git) but log successful:

2021-01-21 11:50:35 INFO Initialising estimates for: United Arab Emirates
2021-01-21 11:50:35 TRACE filtering data for target region United Arab Emirates
2021-01-21 11:50:35 TRACE calling epinow2::epinow to process data for United Arab Emirates
2021-01-21 11:50:35 DEBUG Producing following optional outputs: plots, timing, latest
2021-01-21 11:50:35 DEBUG United Arab Emirates: Running in exact mode for 4000 samples (across 4 chains each with a warm up of 400 itera
tions each) and 138 time steps of which 14 are a forecast
2021-01-21 12:16:45 WARN United Arab Emirates (chain: 1): There were 15 divergent transitions after warmup. See
http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
to find out why this is a problem and how to eliminate them. - 
2021-01-21 12:16:45 WARN United Arab Emirates (chain: 1): Examine the pairs() plot to diagnose sampling problems
 - 
2021-01-21 12:17:03 INFO Completed estimates for: United Arab Emirates

@seabbs it seems to have only output the start files and no results but recorded a runtime of 42.2 seconds in the output. Any ideas?

josebsalazar commented 3 years ago

Comment refers to UAE, Saudi Arabia is even further behind in the update showing only until 1-4-21.

GCC Countries are Oman, Bahrain, UAE, Kuwait, Saudi, and Kuwait.