Open kathsherratt opened 3 years ago
I guess this involves:
get-us-data.R
report.Rmd
- flag states with anomalies.models/rt/update-rt.R
models/timeseries/update-timeseries.R
models/deaths-conv-cases/update-conv.R
evaluation/ensembles.R
evaluation/models.R
Nice work Kath,
Some thoughts:
finalise.R
it would be nice to save a dated table of flags that can then be put into a table in report.Rmd
Nothing new but just dropping in here some useful resources for manual data sense-checks (not sure where else to keep this) https://github.com/nytimes/covid-19-data/issues?q=is%3Aissue+label%3Adata-issue+ https://github.com/CSSEGISandData/COVID-19/issues
Flagging this function specifically for checking a range of methods for anomaly detection (used by Reich lab on US data): https://github.com/reichlab/covidData/blob/master/R/identify_outliers.R https://github.com/reichlab/covidData/blob/master/vignettes/outliers.R
Also, linking to #97 which looks to me like a near duplicate + expansion of this issue
Pinning this issue. We will need to
data-raw
or similar folderdata-modified
or similar folder
Comments by @seabbs