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epiforecasts / covidregionaldata

An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.
https://epiforecasts.io/covidregionaldata/
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Add Estonia data #414

Closed RichardMN closed 2 years ago

RichardMN commented 2 years ago

Inspired by @biocyberman work on Vietnam I had another look and found usable open data for Estonia.

This provides open data for number of cases and number of tests for Estonia, but there are some quirks.

https://www-terviseamet-ee.translate.goog/et/koroonaviirus/avaandmed?_x_tr_sl=et&_x_tr_tl=en&_x_tr_hl=lt&_x_tr_pto=ajax,se,elem

Estonia lists a number of tests and a number of cases for each county (there are 15) for each result, P or N. The google translation isn't quite clear on how these are differentiated and I've not yet tried resolving this against a different presentation (e.g., aggregates):

A case is considered to be a first positive or first negative test per person, i. repeat tests are not considered. Thus, there can be a maximum of 2 cases per person - one positive, one negative.

With this limitation, this is first go at bringing in the data for tests and cases, as well as calculating a test positivity metric. Comments and advice welcome.

RichardMN commented 2 years ago

Any idea why actions aren’t running on this PR, @seabbs ? Did I break something in the workflow directory? (I seem to have made changes to more files than I thought I had so I may have to clean this PR.)

RichardMN commented 2 years ago

Closing in favour of #417

I still need to add to news, bump the version and update the map - this might be synchronized with adding Vietnam.