epiforecasts / forecast.vocs

Contains models and tools to produce short-term forecasts for both case and sequence notifications assuming circulation of either one or two variants. Tools are also provided to allow the evaluation of the use of sequence data for short-term forecasts in both real-world settings and in user generated scenarios.
http://epiforecasts.io/forecast.vocs
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Feature: central estimates off by default #108

Closed seabbs closed 2 years ago

seabbs commented 2 years ago

This PR:

codecov[bot] commented 2 years ago

Codecov Report

Merging #108 (1cff03c) into main (5d5e627) will increase coverage by 0.12%. The diff coverage is 96.89%.

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #108      +/-   ##
==========================================
+ Coverage   94.51%   94.63%   +0.12%     
==========================================
  Files          14       14              
  Lines         838      894      +56     
==========================================
+ Hits          792      846      +54     
- Misses         46       48       +2     
Impacted Files Coverage Δ
R/forecast-tools.R 97.72% <85.71%> (-2.28%) :arrow_down:
R/posterior-methods.R 92.98% <95.00%> (+2.78%) :arrow_up:
R/model.R 98.41% <95.12%> (-1.59%) :arrow_down:
R/forecast-evaluation.R 90.00% <100.00%> (+0.52%) :arrow_up:
R/forecast-methods.R 80.00% <100.00%> (ø)
R/forecast.R 93.24% <100.00%> (+0.28%) :arrow_up:
R/plot.R 93.03% <100.00%> (+0.83%) :arrow_up:
R/postprocess.R 98.65% <100.00%> (+<0.01%) :arrow_up:
R/utils.R 76.66% <100.00%> (+1.66%) :arrow_up:

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