Contains models and tools to produce short-term forecasts for both case and sequence notifications assuming circulation of either one or two variants. Tools are also provided to allow the evaluation of the use of sequence data for short-term forecasts in both real-world settings and in user generated scenarios.
This PR attempts to fix all tests broken due to lack of cran skipping (for cmdstanr models). It also adds a new CI check as CRAN to catch these issues in the future.
This PR attempts to fix all tests broken due to lack of cran skipping (for cmdstanr models). It also adds a new CI check as CRAN to catch these issues in the future.