Issue #481: Update pkgdown structure

nikosbosse commented 2 months ago

Description

This PR closes #481 by reorganising the pgkdown function categories, broadly following the structure outlined in the paper.

In addition, there are some minor fixes like

fixing the doi rendering in the DESCRIPTION
fixing the CRAN downloads badge

Checklist

[x] My PR is based on a package issue and I have explicitly linked it.
[x] I have included the target issue or issues in the PR title as follows: issue-number: PR title
[x] I have tested my changes locally.
[x] I have added or updated unit tests where necessary.
[x] I have updated the documentation if required.
[x] I have built the package locally and run rebuilt docs using roxygen2.
[x] My code follows the established coding standards and I have run lintr::lint_package() to check for style issues introduced by my changes.
[ ] I have added a news item linked to this PR.
[ ] I have reviewed CI checks for this PR and addressed them as far as I am able.

codecov[bot] commented 2 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 98.84%. Comparing base (4fee240) to head (25c59e9). Report is 46 commits behind head on main.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #886 +/- ## ========================================== + Coverage 95.47% 98.84% +3.37% ========================================== Files 21 21 Lines 1568 1556 -12 ========================================== + Hits 1497 1538 +41 + Misses 71 18 -53 ```

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nikosbosse commented 2 months ago

I'm going to go ahead and merge this as there isn't really any substantial code change here and I want to make progress with #837.

I mean apologies.

Also I'd still be interested whether you think the pkgdown categories broadly make sense.

epiforecasts / scoringutils