2018-11-05 discussion

[biomystery]

• [x] import libs with missing sample id/ sample index - solution: with Missing ID and no missing iD. After importing, future will add based on no missing ID.
• [x] import repeated lib IDs (excude scRNA/scATAC - leave there but keep the option of scRNA/scATAC)) delayed
• [x] add label in MastqTs_xx; link that label to setQC default
• [ ] add new cols/tables into database for the request service: 1) user/collaborator 2) sample Info 3) storage info in track 1.

• [x] masterTS app interface: 1) defined all data in database/django models. 2) bulk input (determine cols) and correlates with other sampleInfo

  Activities:

  1. store/import data
  2. display data
  3. input data

Functions:

3. epigen user functions:

   • [x] input sample info page
   • [x] input MastQC related info
   • [ ] display info

4. runSetQC:

   • [x] only run libs that stored already -> store/import data (setQC required columns/models)
   • [x] libs not processed need process -> new lib/seq info inputted (by experimentalist) -> input page

5. collaborator function

   • [ ] allow collaborator login and display setQCs for them
   • [ ] request function: allow collaborator request serivice (based on template Dave provided). Solutions: 1) user's profile (user datatable) 2) use upload files methods
   • [ ] request function 2 - store sample Info (input page) : (epigen part) review the request and submit to store in DB
   • [ ] display requested info: status and etc.

6. replace google spreadsheet

   • [x] strategy: test the app + co-existed app and gs for a period of time
   • [x] add new seqs page change to be the same as add libs/samples so that people can copy paste
   • [ ] add more columns from sample tracking sheet into data model
   • [x] design the collaborator/pi model - Fisc + research
   • [x] bulk input all the sample Info (copy / paste)
   • [x] review pages after input samples/libs/seqs
   • [ ] display all data
   • [x] add the new tables into a new db diagram.

Summary

1. focus on input pages to allow user input
2. after that we can close setQCapp

[biomystery]

1. [ ] sample input pages: 1) covered most of the columns in input page. 2) bulk entry(?) 3) collaboration info (colB-colH ?) 4) colN-colT ?
2. [ ] lib input page: 1) sampleinfo has too many items. current method cannot directly find one specific sample. - solution: use input box with key words 联想 http://donlianli.iteye.com/blog/1923017。 2）will change to bulk input and validate sample after save 3) everything is included.
3. [x] seq input page: 1) perfect. 2) in future, can add a flowcell id and can run demuplex for nextseq machine.

[biomystery]

https://uxdesign.cc/design-better-data-tables-4ecc99d23356

[biomystery]

170 #171