biomystery commented 5 years ago

transition period: prepare to discard gs

[x] check gs = lims (model level)
[x] check gs = lims (input interface): need check after adding storage
[x] import existing data (history/metadata) except collaborator@biomystery @avialee (after Sample input can handle)
[x] check gs = lims (input level for tracking sheet 1 - collabrators: how to handle unseen collaborators in the input page? - need state clearly new collabrator's sample need to build profile/account first (Dave can handle - manager interface or admin)
[x] import existing data (history/setQC) @biomystery @avialee (after Sample input can handle)
[x] imported (newer than 10/18) TS 1) group into db created accounts & group (after Sample input can handle)
[x] template prepare for users (@avialee )
[x] make setQC totally independent of gs (@biomystery)
[ ] complete bioinformatics fields (@biomystery)
[ ] add update bioinformatics fields into db setQCapp (@biomystery)
[x] !!final check: export from LIMS and compare with gs
[x] annouce end of the period and gs will be discarded

Next on LIMS (Manager interface, login -> enter: based on group)

[x] data sync: SeqManager (seqid e.g. JYH_xxx) -> Metadata app
[ ] data sync: check if SeqManager (other fields) == fields Metadata
[ ] data sync: SeqManager (reads_number per lib ) -> Metadata app
[ ] [candidate solution] Meta data add new seqs has option to sync/demux to seqManager: if checked, then data transfer/sync from Metadata app -> SeqManger & demux(optional)
[ ] data sync: SeqManager (completeness, organized by run, conflicts) <- Metadata app (required, not checking run's completeness and conflicts of barcodes ) - solutions ?

[ ] db index & elastic search on Metadata app
[ ] Model need discuss
[ ] view need discuss
[ ] functions: (1) update status by internal ppl (manager/Dave or bench scientist) (2) view status (collaborators)
[ ] service request

biomystery commented 5 years ago

biomystery commented 5 years ago