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epigen / CellWhisperer

CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
https://cellwhisperer.bocklab.org
GNU General Public License v3.0
31 stars 5 forks source link

check for existing files #2

Open killerz99 opened 1 day ago

killerz99 commented 1 day ago

Hi, my company has blocked access to hugging face, but I have managed to download file dependencies to their expected location based on the config.yaml file. However, when running snakemake it still tries to connect to cdn-lfs.hf.co which dies due to lack of connection. Is there a way to have it skip the download if the already files exist? Thanks.

killerz99 commented 1 day ago

I think I just comment out the down_load_models rules from the Snakefile

include: "../shared/rules/download_models.smk"

moritzschaefer commented 7 hours ago

Hi @killerz99, yes this should do in this case! Let me know if you face any other challenges!