Provide example/test data and results for each module

[sreichl]

Use RECIPES → just point to the recipe's section where the module is used for example config, data and results module examples: point to recipes and their respective configs, annot, etc in the main repo, therefore only one place to maintain examples → this main repo

• Benchmarks are good sources of structured data
• data and results are often large, opt for download instructions for data and do not provide the results or only snapshots e.g., in the docs
• maybe: https://github.com/epigen/microtest/tree/master for ATAC & RNA
• module examples: point to recipes and their respective configs, annot, etc in the main repo
  • Use this: https://snakemake.github.io/snakemake-plugin-catalog/plugins/storage/zenodo.html
  • you can directly get intermediate results from Recipes that are uploaded to Zenodo as input to the workflow (requires an internet connection)

Check for existing open issue that correspond to below's tasks

• [x] https://github.com/epigen/unsupervised_analysis
• [x] https://github.com/epigen/atacseq_pipeline
• [ ] https://github.com/epigen/dea_limma
• [x] https://github.com/epigen/enrichment_analysis
• [ ] https://github.com/epigen/genome_tracks
• [x] https://github.com/epigen/scrnaseq_processing_seurat
• [x] https://github.com/epigen/dea_seurat
• [ ] https://github.com/epigen/mixscape_seurat
• [ ] https://github.com/epigen/spilterlize_integrate