(re-)visit and consider using PEP/PEPkit - Githubissues

epigen / MrBiomics

MrBiomics - Modules & Recipes augment Bioinformatics for Multi-Omics Analyses at Scale

MIT License

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(re-)visit and consider using PEP/PEPkit #26

Open sreichl opened 1 month ago

sreichl commented 1 month ago

https://pep.databio.org/peppy/

(re-)visit and consider using PEP/PEPkit format for config and annotation by N Sheffield (Snakemake natively supports it)
- https://pep.databio.org/
- does it solve a problem I have? or introduce more problems?
- How stable and common?
- What would work better/smoother if I switch?
- Applicable also for all downstream modules or only classic pipelines?