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epigen / RnBeads

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https://rnbeads.org/
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hclustfun(distr) : NA/NaN/Inf in foreign function call (arg 10) #48

Open VivianBailey opened 8 months ago

VivianBailey commented 8 months ago

I ran RnBeads v2.20.0 for my EPIC v2 data. The pipeline got stuck at "STARTED Mixups Visualization Section" with error "hclustfun(distr) : NA/NaN/Inf in foreign function call (arg 10)". I noticed the STAINING.1 and STAINING.2 showed "No intensities found for this quality control probe". I am unsure if it is related to the error.

Other warnings include: "'memory.size()' is no longer supported" and "In readChar(con, nchars = n) : truncating string with embedded nuls".

bariskalem commented 7 months ago

Hi @VivianBailey, The main version of RnBeads is not compatible with EPICv2 data. Development is in progress for EPICv2 compatibility. Please see this comment for your issue: https://github.com/epigen/RnBeads/issues/46#issuecomment-1845349778