Infinium MethylationEPIC v2.0 normalization methods

epigen / RnBeads

Git working Repo synced to the Bioconductor: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html

https://rnbeads.org/

7 stars 8 forks source link

Infinium MethylationEPIC v2.0 normalization methods #57

Closed christpa closed 5 days ago

christpa commented 1 week ago

Hi,

When running the RnBeads pipeline for Epic v2 (HumanMethylationEPICv2), I get a WARNING message saying that the background subtraction method enmix.oob is not suported for EPIC v2. However I can't find any documentation on which background subtratcion methods that are supported for EPIC v2.

christpa commented 5 days ago

The normalizing option "sesam.noob", does work for EPIC v2.