make test data larger to include peaks and motifs

epigen / atacseq_pipeline

Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

https://epigen.github.io/atacseq_pipeline/

MIT License

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make test data larger to include peaks and motifs #35

Open sreichl opened 10 months ago

sreichl commented 10 months ago

so that the whole workflow can be tested using the test data

something like this If working with FASTQ data, a straightforward way to generate a small test set is to subsample the first million lines of a file (first 250,000 reads) as follows: head -n 1000000 FASTQ FILE.fq > test fastq.fq

or just sampling more reads

sreichl commented 7 months ago

could be obsolete once the ATAC-seq RECIPE is provided.