epigen / dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.
https://epigen.github.io/dea_limma/
MIT License
23 stars 1 forks source link

map features to genomic regions #15

Open sreichl opened 2 months ago

sreichl commented 2 months ago

helper script to map features to genomic regions as BED files (code exists) Add all mentioned helper scripts to the respective recipes and link from the main repository to the recipe so it’s always in one place. add it as a interface rule for ATAC-seq/ChIP-seq data between DEA and enrichment analysis

share script as gist and mention in docs here and enrichment_analysis?

sreichl commented 2 months ago

https://github.com/epigen/dea_limma/tree/generate_bed_files

sreichl commented 2 months ago

https://github.com/epigen/dea_limma/pull/19