A Snakemake workflow and MrBiomics module for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
helper script to map features to genomic regions as BED files (code exists)
Add all mentioned helper scripts to the respective recipes and link from the main repository to the recipe so it’s always in one place. add it as a interface rule for ATAC-seq/ChIP-seq data between DEA and enrichment analysis
share script as gist and mention in docs here and enrichment_analysis?
sreichl
commented
1 month ago
helper script to map features to genomic regions as BED files (code exists) Add all mentioned helper scripts to the respective recipes and link from the main repository to the recipe so it’s always in one place. add it as a interface rule for ATAC-seq/ChIP-seq data between DEA and enrichment analysis
share script as gist and mention in docs here and enrichment_analysis?