Closed sreichl closed 2 months ago
use HOCOMOCO in 2024 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkad1077/7424436
Here is my solution using pycisTarget (coded for regions, but theoretically should work also for genes). That's a snippet of rules, scripts, environments and short instructions, bringing from a region set and consensus region set to a enrichment table - I didn't include the aggregarion step, but I have code for it also, let me know enrichment_pycistopic.zip . Hope it helps :)
@dariarom94 amazing thanks!