Aggregate/visualize not working (because of empty output?)

epigen / enrichment_analysis

A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

https://epigen.github.io/enrichment_analysis/

MIT License

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Aggregate/visualize not working (because of empty output?) #18

Closed Rubbert closed 3 months ago

Rubbert commented 8 months ago

These jobs remain:

Potentially because of empty combined files(?):

The individual outputs are not empty:

Maybe because nothing is significant?

sreichl commented 3 months ago

can't reproduce. maybe solved with next release (coming soon) with local GREAT usage. Empty results are accounted for across the workflow. Please let me know if something doesn't work with the next release.