user-defined database support for GREAT

epigen / enrichment_analysis

A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

https://epigen.github.io/enrichment_analysis/

MIT License

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Closed sreichl closed 3 months ago

sreichl commented 3 months ago

new GREAT works with user-provided gene lists. both GMT and manual possible, but must be Entrez ID see docs https://jokergoo.github.io/rGREAT/articles/local-GREAT.html#manually-set-gene-sets