A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
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user-defined database support for GREAT #21
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sreichl closed 3 months ago
new GREAT works with user-provided gene lists. both GMT and manual possible, but must be Entrez ID see docs https://jokergoo.github.io/rGREAT/articles/local-GREAT.html#manually-set-gene-sets