release v1.0.0

[sreichl]

• [x] document versions in env.yaml files
• [x] check/update Snakemake report
• [x] clean code ie remove commented code and unsued files
• [x] run example from A to Z
• [x] update docs
  • [x] rulegraph
  • [x] configs (example config)
  • [x] CITATION.cff
  • [x] README
• [x] check example data, put download instructions for resources and test data in README (test data is hg19 but cisTarget resource are used from hg38 as hg19 resources do not work)

note for docs

• GREAT
  • rGREAT is not using the provided cores although correct parameter -> could not make it work, still provide it as parameter
  • region-gene association wihtout background: faster and more genes and will be anyway accounted for in the gene-based analyses
  • research & document GREAT statistics: https://great-help.atlassian.net/wiki/spaces/GREAT/pages/655456/Statistics
• pycisTarget:
  • bakcground regions not used
  • point to github page with instruction for custom cisTarget database creation
• RcisTarget: uses background