Closed sandragold closed 1 year ago
Hi Sandra, yes, I actually know what is happening. There is a bug in GSEApy when there is literally no result of the analysis (i.e., not only nothing significant, but truly an empty result). I recently also faced this error and circumvented it in my latest commit using exception handling specifically for ValueErrors.
This should resolve the problem for you as well. In that case, please close the issue.
Cheers, Stephan
PS: If you find the workflow useful please consider Starring it, thanks!
It worked, thank you! :)
Hi!
Do you have an idea why your pipeline fails always on this step? :) I've tried 2 different inputs and there is always problem on that step 32 of 81.
Below is the part of the console output with the error message:
Here is attached the log file. 2023-05-26T181430.372545.snakemake.log
Please let me know if you need anything else! Thanks Sandra