accelerate CSV read & write in R with fread & fwrite

[sreichl]

library("data.table")

#fast writing
fwrite(as.data.frame(df), file=file.path("path/to/file.csv"), row.names=TRUE)

#fast reading
df <- data.frame(fread(file.path("path/to/file.csv"), header=TRUE), row.names=1)

• [x] Make a checklist for all modules
• [x] Unsupervised Analysis
• [x] Processing & Integration
• [x] Differential Analysis with limma
• [x] Enrichment Analysis
• [x] scRNA-seq Processing using Seurat
• [x] Differential Analysis using Seurat
• [x] Perturbation Analysis using Mixscape from Seurat