epigen / scifiRNA-seq

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"gtf_file" not in args Namespace #1

Closed afrendeiro closed 3 years ago

afrendeiro commented 3 years ago

In the map command, the "gtf_file" location is being requested from the args namespace instead of the config: https://github.com/epigen/scifiRNA-seq/blob/840ee504bf1bf1fab44bd2e225850456323ec3a3/scifi/map.py#L79