A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
provide options from Seurat e.g., log2transform (actually its log1p ie ln(x+1) I think), SCTransform,...
think carefully. Is SCTransform enough/best? Are there any downsides (work)/updsides (???) in adding this functionality? Do I/we need it?
provide options from Seurat e.g., log2transform (actually its log1p ie ln(x+1) I think), SCTransform,... think carefully. Is SCTransform enough/best? Are there any downsides (work)/updsides (???) in adding this functionality? Do I/we need it?
in that case, more functionality is required