A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
[x] double memory after fail in normalize (and correct) rule -> already the case
[x] check if all env export rules have 1GB only memory requirement
[x] add HVF flag, where one can define the number of highly variable features to be continued with with 0 meaning all (if the number is higher than provided features then take also all) --breaking change--